Package: densityClust 0.3.3.9000

densityClust: Clustering by Fast Search and Find of Density Peaks

An improved implementation (based on k-nearest neighbors) of the density peak clustering algorithm, originally described by Alex Rodriguez and Alessandro Laio (Science, 2014 vol. 344). It can handle large datasets (> 100,000 samples) very efficiently. It was initially implemented by Thomas Lin Pedersen, with inputs from Sean Hughes and later improved by Xiaojie Qiu to handle large datasets with kNNs.

Authors:Thomas Lin Pedersen [aut, cre], Sean Hughes [aut], Xiaojie Qiu [aut]

densityClust_0.3.3.9000.tar.gz
densityClust_0.3.3.9000.zip(r-4.5)densityClust_0.3.3.9000.zip(r-4.4)densityClust_0.3.3.9000.zip(r-4.3)
densityClust_0.3.3.9000.tgz(r-4.4-x86_64)densityClust_0.3.3.9000.tgz(r-4.4-arm64)densityClust_0.3.3.9000.tgz(r-4.3-x86_64)densityClust_0.3.3.9000.tgz(r-4.3-arm64)
densityClust_0.3.3.9000.tar.gz(r-4.5-noble)densityClust_0.3.3.9000.tar.gz(r-4.4-noble)
densityClust_0.3.3.9000.tgz(r-4.4-emscripten)densityClust_0.3.3.9000.tgz(r-4.3-emscripten)
densityClust.pdf |densityClust.html
densityClust/json (API)
NEWS

# Install 'densityClust' in R:
install.packages('densityClust', repos = c('https://thomasp85.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thomasp85/densityclust/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

7.15 score 151 stars 73 scripts 1.1k downloads 6 mentions 8 exports 34 dependencies

Last updated 10 months agofrom:887adc74a9. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-win-x86_64OKOct 25 2024
R-4.5-linux-x86_64OKOct 25 2024
R-4.4-win-x86_64OKOct 25 2024
R-4.4-mac-x86_64OKOct 25 2024
R-4.4-mac-aarch64OKOct 25 2024
R-4.3-win-x86_64OKOct 25 2024
R-4.3-mac-x86_64OKOct 25 2024
R-4.3-mac-aarch64OKOct 25 2024

Exports:clusteredclustersdensityClustestimateDcfindClustersplotDensityClustplotMDSplotTSNE

Dependencies:clicolorspacecpp11fansifarverFNNggplot2ggrepelgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangRtsnescalestibbleutf8vctrsviridisLitewithr