Package: densityClust 0.3.3.9000
densityClust: Clustering by Fast Search and Find of Density Peaks
An improved implementation (based on k-nearest neighbors) of the density peak clustering algorithm, originally described by Alex Rodriguez and Alessandro Laio (Science, 2014 vol. 344). It can handle large datasets (> 100,000 samples) very efficiently. It was initially implemented by Thomas Lin Pedersen, with inputs from Sean Hughes and later improved by Xiaojie Qiu to handle large datasets with kNNs.
Authors:
densityClust_0.3.3.9000.tar.gz
densityClust_0.3.3.9000.zip(r-4.7)densityClust_0.3.3.9000.zip(r-4.6)densityClust_0.3.3.9000.zip(r-4.5)
densityClust_0.3.3.9000.tgz(r-4.6-x86_64)densityClust_0.3.3.9000.tgz(r-4.6-arm64)densityClust_0.3.3.9000.tgz(r-4.5-x86_64)densityClust_0.3.3.9000.tgz(r-4.5-arm64)
densityClust_0.3.3.9000.tar.gz(r-4.7-arm64)densityClust_0.3.3.9000.tar.gz(r-4.7-x86_64)densityClust_0.3.3.9000.tar.gz(r-4.6-arm64)densityClust_0.3.3.9000.tar.gz(r-4.6-x86_64)
densityClust_0.3.3.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
densityClust/json (API)
NEWS
| # Install 'densityClust' in R: |
| install.packages('densityClust', repos = c('https://thomasp85.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thomasp85/densityclust/issues
Last updated from:887adc74a9. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 151 | ||
| linux-devel-x86_64 | OK | 137 | ||
| source / vignettes | OK | 190 | ||
| linux-release-arm64 | OK | 162 | ||
| linux-release-x86_64 | OK | 118 | ||
| macos-release-arm64 | OK | 98 | ||
| macos-release-x86_64 | OK | 196 | ||
| macos-oldrel-arm64 | OK | 121 | ||
| macos-oldrel-x86_64 | OK | 172 | ||
| windows-devel | OK | 125 | ||
| windows-release | OK | 98 | ||
| windows-oldrel | OK | 156 | ||
| wasm-release | OK | 115 |
Exports:clusteredclustersdensityClustestimateDcfindClustersplotDensityClustplotMDSplotTSNE
Dependencies:clicpp11farverFNNggplot2ggrepelgluegridExtragtableisobandlabelinglifecycleR6RColorBrewerRcpprlangRtsneS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check whether a densityCluster object have been clustered | clustered clustered.densityCluster |
| Extract cluster membership from a densityCluster object | clusters clusters.densityCluster |
| Calculate clustering attributes based on the densityClust algorithm | densityClust |
| Estimate the distance cutoff for a specified neighbor rate | estimateDc |
| Detect clusters in a densityCluster obejct | findClusters findClusters.densityCluster |
| Plot densityCluster results | plotDensityClust |
| Plot observations using multidimensional scaling and colour by cluster | plotMDS |
| Plot observations using t-distributed neighbor embedding and colour by cluster | plotTSNE |
