Package: densityClust 0.3.3.9000

densityClust: Clustering by Fast Search and Find of Density Peaks

An improved implementation (based on k-nearest neighbors) of the density peak clustering algorithm, originally described by Alex Rodriguez and Alessandro Laio (Science, 2014 vol. 344). It can handle large datasets (> 100,000 samples) very efficiently. It was initially implemented by Thomas Lin Pedersen, with inputs from Sean Hughes and later improved by Xiaojie Qiu to handle large datasets with kNNs.

Authors:Thomas Lin Pedersen [aut, cre], Sean Hughes [aut], Xiaojie Qiu [aut]

densityClust_0.3.3.9000.tar.gz
densityClust_0.3.3.9000.zip(r-4.7)densityClust_0.3.3.9000.zip(r-4.6)densityClust_0.3.3.9000.zip(r-4.5)
densityClust_0.3.3.9000.tgz(r-4.6-x86_64)densityClust_0.3.3.9000.tgz(r-4.6-arm64)densityClust_0.3.3.9000.tgz(r-4.5-x86_64)densityClust_0.3.3.9000.tgz(r-4.5-arm64)
densityClust_0.3.3.9000.tar.gz(r-4.7-arm64)densityClust_0.3.3.9000.tar.gz(r-4.7-x86_64)densityClust_0.3.3.9000.tar.gz(r-4.6-arm64)densityClust_0.3.3.9000.tar.gz(r-4.6-x86_64)
densityClust_0.3.3.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
densityClust/json (API)
NEWS

# Install 'densityClust' in R:
install.packages('densityClust', repos = c('https://thomasp85.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thomasp85/densityclust/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

7.27 score 162 stars 89 scripts 1.1k downloads 6 mentions 8 exports 22 dependencies

Last updated from:887adc74a9. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK151
linux-devel-x86_64OK137
source / vignettesOK190
linux-release-arm64OK162
linux-release-x86_64OK118
macos-release-arm64OK98
macos-release-x86_64OK196
macos-oldrel-arm64OK121
macos-oldrel-x86_64OK172
windows-develOK125
windows-releaseOK98
windows-oldrelOK156
wasm-releaseOK115

Exports:clusteredclustersdensityClustestimateDcfindClustersplotDensityClustplotMDSplotTSNE

Dependencies:clicpp11farverFNNggplot2ggrepelgluegridExtragtableisobandlabelinglifecycleR6RColorBrewerRcpprlangRtsneS7scalesvctrsviridisLitewithr